[INFO   ] Starting gmx_MMPBSA v1.5.2
[DEBUG  ] WDIR          : /media/romi/My Book Duo/completed-simulation-oracle/auto-immune/rs3/6bfs-rs3/312k/free-energy
[DEBUG  ] AMBERHOME     : /home/romi/anaconda3/envs/gmxMMPBSA
[DEBUG  ] PYTHON EXE    : /home/romi/anaconda3/envs/gmxMMPBSA/bin/python
[DEBUG  ] PYTHON VERSION: 3.9.12 (main, Apr  5 2022, 06:56:58) [GCC 7.5.0]
[DEBUG  ] MPI           : /home/romi/anaconda3/envs/gmxMMPBSA/bin/mpirun
[DEBUG  ] ParmEd        : 3.4.3
[DEBUG  ] OS PLATFORM   : Linux-5.15.0-69-generic-x86_64-with-glibc2.31
[DEBUG  ] OS SYSTEM     : Linux
[DEBUG  ] OS VERSION    : #76~20.04.1-Ubuntu SMP Mon Mar 20 15:54:19 UTC 2023
[DEBUG  ] OS PROCESSOR  : x86_64

[INFO   ] Command-line
  gmx_MMPBSA -O -i mmpbsa.in -cs md_1_30.tpr -ci index.ndx -cg 18 19 -ct dynamic-nopbc-2.xtc -cp topol.top -o FINAL_RESULTS_MMPBSA.dat -eo FINAL_RESULTS_MMPBSA.csv

[DEBUG  ] |Input file:
[DEBUG  ] |--------------------------------------------------------------
[DEBUG  ] |Input file generated by gmx_MMPBSA (v1.5.2)
[DEBUG  ] |Be careful with the variables you modify, some can have severe consequences on the results you obtain.
[DEBUG  ] |
[DEBUG  ] |# General namelist variables
[DEBUG  ] |&general
[DEBUG  ] |  sys_name             = ""                                             # System name
[DEBUG  ] |  startframe           = 10                                             # First frame to analyze
[DEBUG  ] |  endframe             = 9900                                       # Last frame to analyze
[DEBUG  ] |  interval             = 1600                                         # Number of frames between adjacent frames analyzed
[DEBUG  ] |  forcefields          = "oldff/leaprc.ff99SB,leaprc.gaff"              # Define the force field to build the Amber topology
[DEBUG  ] |  ions_parameters      = 1                                              # Define ions parameters to build the Amber topology
[DEBUG  ] |  PBRadii              = 3                                              # Define PBRadii to build amber topology from GROMACS files
[DEBUG  ] |  temperature          = 312                                        # Temperature
[DEBUG  ] |  qh_entropy           = 0                                              # Do quasi-harmonic calculation
[DEBUG  ] |  interaction_entropy  = 0                                              # Do Interaction Entropy calculation
[DEBUG  ] |  ie_segment           = 25                                             # Trajectory segment to calculate interaction entropy
[DEBUG  ] |  c2_entropy           = 0                                              # Do C2 Entropy calculation
[DEBUG  ] |  assign_chainID       = 0                                              # Assign chains ID
[DEBUG  ] |  exp_ki               = 0.0                                            # Experimental Ki in nM
[DEBUG  ] |  full_traj            = 0                                              # Print a full traj. AND the thread trajectories
[DEBUG  ] |  gmx_path             = ""                                             # Force to use this path to get GROMACS executable
[DEBUG  ] |  keep_files           = 2                                              # How many files to keep after successful completion
[DEBUG  ] |  netcdf               = 0                                              # Use NetCDF intermediate trajectories
[DEBUG  ] |  solvated_trajectory  = 1                                              # Define if it is necessary to cleanup the trajectories
[DEBUG  ] |  verbose              = 1                                              # How many energy terms to print in the final output
[DEBUG  ] |/
[DEBUG  ] |
[DEBUG  ] |# (AMBER) Generalized-Born namelist variables
[DEBUG  ] |&gb
[DEBUG  ] |  igb                  = 5                                              # GB model to use
[DEBUG  ] |  intdiel              = 1.0                                            # Internal dielectric constant for sander
[DEBUG  ] |  extdiel              = 78.5                                           # External dielectric constant for sander
[DEBUG  ] |  saltcon              = 0.0                                            # Salt concentration (M)
[DEBUG  ] |  surften              = 0.0072                                         # Surface tension
[DEBUG  ] |  surfoff              = 0.0                                            # Surface tension offset
[DEBUG  ] |  molsurf              = 0                                              # Use Connelly surface ('molsurf' program)
[DEBUG  ] |  msoffset             = 0.0                                            # Offset for molsurf calculation
[DEBUG  ] |  probe                = 1.4                                            # Solvent probe radius for surface area calc
[DEBUG  ] |  ifqnt                = 0                                              # Use QM on part of the system
[DEBUG  ] |  qm_theory            = ""                                             # Semi-empirical QM theory to use
[DEBUG  ] |  qm_residues          = ""                                             # Residues to treat with QM
[DEBUG  ] |  qmcharge_com         = 0                                              # Charge of QM region in complex
[DEBUG  ] |  qmcharge_lig         = 0                                              # Charge of QM region in ligand
[DEBUG  ] |  qmcharge_rec         = 0                                              # Charge of QM region in receptor
[DEBUG  ] |  qmcut                = 9999.0                                         # Cutoff in the QM region
[DEBUG  ] |  scfconv              = 1e-08                                          # Convergence criteria for the SCF calculation, in kcal/mol
[DEBUG  ] |  peptide_corr         = 0                                              # Apply MM correction to peptide linkages
[DEBUG  ] |  writepdb             = 1                                              # Write a PDB file of the selected QM region
[DEBUG  ] |  verbosity            = 0                                              # Controls the verbosity of QM/MM related output
[DEBUG  ] |  alpb                 = 0                                              # Use Analytical Linearized Poisson-Boltzmann (ALPB)
[DEBUG  ] |  arad_method          = 1                                              # Selected method to estimate the effective electrostatic size
[DEBUG  ] |/
[DEBUG  ] |
[DEBUG  ] |# (AMBER) Possion-Boltzmann namelist variables
[DEBUG  ] |&pb
[DEBUG  ] |  ipb                  = 2                                              # Dielectric model for PB
[DEBUG  ] |  inp                  = 2                                              # Nonpolar solvation method
[DEBUG  ] |  sander_apbs          = 0                                              # Use sander.APBS?
[DEBUG  ] |  indi                 = 1.0                                            # Internal dielectric constant
[DEBUG  ] |  exdi                 = 80.0                                           # External dielectric constant
[DEBUG  ] |  emem                 = 4.0                                            # Membrane dielectric constant
[DEBUG  ] |  smoothopt            = 1                                              # Set up dielectric values for finite-difference grid edges that are located across the solute/solvent dielectric boundary
[DEBUG  ] |  istrng               = 0.0                                            # Ionic strength (M)
[DEBUG  ] |  radiopt              = 1                                              # Use optimized radii?
[DEBUG  ] |  prbrad               = 1.4                                            # Probe radius
[DEBUG  ] |  iprob                = 2.0                                            # Mobile ion probe radius (Angstroms) for ion accessible surface used to define the Stern layer
[DEBUG  ] |  sasopt               = 0                                              # Molecular surface in PB implict model
[DEBUG  ] |  arcres               = 0.25                                           # The resolution (Å) to compute solvent accessible arcs
[DEBUG  ] |  memopt               = 0                                              # Use PB optimization for membrane
[DEBUG  ] |  mprob                = 2.7                                            # Membrane probe radius in Å
[DEBUG  ] |  mthick               = 40.0                                           # Membrane thickness
[DEBUG  ] |  mctrdz               = 0.0                                            # Distance to offset membrane in Z direction
[DEBUG  ] |  poretype             = 1                                              # Use exclusion region for channel proteins
[DEBUG  ] |  npbopt               = 0                                              # Use NonLinear PB solver?
[DEBUG  ] |  solvopt              = 1                                              # Select iterative solver
[DEBUG  ] |  accept               = 0.001                                          # Sets the iteration convergence criterion (relative to the initial residue)
[DEBUG  ] |  linit                = 1000                                           # Number of SCF iterations
[DEBUG  ] |  fillratio            = 4.0                                            # Ratio between the longest dimension of the rectangular finite-difference grid and that of the solute
[DEBUG  ] |  scale                = 2.0                                            # 1/scale = grid spacing for the finite difference solver (default = 1/2 Å)
[DEBUG  ] |  nbuffer              = 0.0                                            # Sets how far away (in grid units) the boundary of the finite difference grid is away from the solute surface
[DEBUG  ] |  nfocus               = 2                                              # Electrostatic focusing calculation
[DEBUG  ] |  fscale               = 8                                              # Set the ratio between the coarse and fine grid spacings in an electrostatic focussing calculation
[DEBUG  ] |  npbgrid              = 1                                              # Sets how often the finite-difference grid is regenerated
[DEBUG  ] |  bcopt                = 5                                              # Boundary condition option
[DEBUG  ] |  eneopt               = 2                                              # Compute electrostatic energy and forces
[DEBUG  ] |  frcopt               = 0                                              # Output for computing electrostatic forces
[DEBUG  ] |  scalec               = 0                                              # Option to compute reaction field energy and forces
[DEBUG  ] |  cutfd                = 5.0                                            # Cutoff for finite-difference interactions
[DEBUG  ] |  cutnb                = 0.0                                            # Cutoff for nonbonded interations
[DEBUG  ] |  nsnba                = 1                                              # Sets how often atom-based pairlist is generated
[DEBUG  ] |  decompopt            = 2                                              # Option to select different decomposition schemes when INP = 2
[DEBUG  ] |  use_rmin             = 1                                              # The option to set up van der Waals radii
[DEBUG  ] |  sprob                = 0.557                                          # Solvent probe radius for SASA used to compute the dispersion term
[DEBUG  ] |  vprob                = 1.3                                            # Solvent probe radius for molecular volume (the volume enclosed by SASA)
[DEBUG  ] |  rhow_effect          = 1.129                                          # Effective water density used in the non-polar dispersion term calculation
[DEBUG  ] |  use_sav              = 1                                              # Use molecular volume (the volume enclosed by SASA) for cavity term calculation
[DEBUG  ] |  cavity_surften       = 0.0378                                         # Surface tension
[DEBUG  ] |  cavity_offset        = -0.5692                                        # Offset for nonpolar solvation calc
[DEBUG  ] |  maxsph               = 400                                            # Approximate number of dots to represent the maximum atomic solvent accessible surface
[DEBUG  ] |  maxarcdot            = 1500                                           # Number of dots used to store arc dots per atom
[DEBUG  ] |  npbverb              = 0                                              # Option to turn on verbose mode
[DEBUG  ] |/
[DEBUG  ] |
[DEBUG  ] |# Decomposition namelist variables
[DEBUG  ] |&decomposition
[DEBUG  ] |  idecomp              = 1                                              # Which type of decomposition analysis to do
[DEBUG  ] |  dec_verbose          = 0                                              # Control energy terms are printed to the output
[DEBUG  ] |  print_res            = "within 6"                                     # Which residues to print decomposition data for
[DEBUG  ] |  csv_format           = 1                                              # Write decomposition data in CSV format
[DEBUG  ] |/
[DEBUG  ] |
[DEBUG  ] |--------------------------------------------------------------
[DEBUG  ] 
[INFO   ] Checking mmpbsa.in input file...
[INFO   ] Checking mmpbsa.in input file...Done.

[INFO   ] Checking external programs...
[INFO   ] cpptraj found! Using /home/romi/anaconda3/envs/gmxMMPBSA/bin/cpptraj
[INFO   ] tleap found! Using /home/romi/anaconda3/envs/gmxMMPBSA/bin/tleap
[INFO   ] parmchk2 found! Using /home/romi/anaconda3/envs/gmxMMPBSA/bin/parmchk2
[INFO   ] sander found! Using /home/romi/anaconda3/envs/gmxMMPBSA/bin/sander
[INFO   ] Using GROMACS version > 5.x.x!
[INFO   ] gmx found! Using /usr/local/gromacs/bin/gmx
[INFO   ] Checking external programs...Done.

[INFO   ] Building AMBER topologies from GROMACS files...
[INFO   ] Get PDB files from GROMACS structures files...
[INFO   ] Making gmx_MMPBSA index for complex...
[DEBUG  ] Running command: echo name 18 GMXMMPBSA_REC\n name 19 GMXMMPBSA_LIG\n  18 | 19\n q\n | /usr/local/gromacs/bin/gmx make_ndx -n index.ndx -o _GMXMMPBSA_COM_index.ndx
[DEBUG  ]                      :-) GROMACS - gmx make_ndx, 2021.5 (-:
[DEBUG  ] 
[DEBUG  ]                             GROMACS is written by:
[DEBUG  ]      Andrey Alekseenko              Emile Apol              Rossen Apostolov     
[DEBUG  ]          Paul Bauer           Herman J.C. Berendsen           Par Bjelkmar       
[DEBUG  ]        Christian Blau           Viacheslav Bolnykh             Kevin Boyd        
[DEBUG  ]      Aldert van Buuren           Rudi van Drunen             Anton Feenstra      
[DEBUG  ]     Gilles Gouaillardet             Alan Gray               Gerrit Groenhof      
[DEBUG  ]        Anca Hamuraru            Vincent Hindriksen          M. Eric Irrgang      
[DEBUG  ]       Aleksei Iupinov           Christoph Junghans             Joe Jordan        
[DEBUG  ]     Dimitrios Karkoulis            Peter Kasson                Jiri Kraus        
[DEBUG  ]       Carsten Kutzner              Per Larsson              Justin A. Lemkul     
[DEBUG  ]        Viveca Lindahl            Magnus Lundborg             Erik Marklund       
[DEBUG  ]         Pascal Merz             Pieter Meulenhoff            Teemu Murtola       
[DEBUG  ]         Szilard Pall               Sander Pronk              Roland Schulz       
[DEBUG  ]        Michael Shirts            Alexey Shvetsov             Alfons Sijbers      
[DEBUG  ]        Peter Tieleman              Jon Vincent              Teemu Virolainen     
[DEBUG  ]      Christian Wennberg            Maarten Wolf              Artem Zhmurov       
[DEBUG  ]                            and the project leaders:
[DEBUG  ]         Mark Abraham, Berk Hess, Erik Lindahl, and David van der Spoel
[DEBUG  ] 
[DEBUG  ] Copyright (c) 1991-2000, University of Groningen, The Netherlands.
[DEBUG  ] Copyright (c) 2001-2019, The GROMACS development team at
[DEBUG  ] Uppsala University, Stockholm University and
[DEBUG  ] the Royal Institute of Technology, Sweden.
[DEBUG  ] check out http://www.gromacs.org for more information.
[DEBUG  ] 
[DEBUG  ] GROMACS is free software; you can redistribute it and/or modify it
[DEBUG  ] under the terms of the GNU Lesser General Public License
[DEBUG  ] as published by the Free Software Foundation; either version 2.1
[DEBUG  ] of the License, or (at your option) any later version.
[DEBUG  ] 
[DEBUG  ] GROMACS:      gmx make_ndx, version 2021.5
[DEBUG  ] Executable:   /usr/local/gromacs/bin/gmx
[DEBUG  ] Data prefix:  /usr/local/gromacs
[DEBUG  ] Working dir:  /media/romi/My Book Duo/completed-simulation-oracle/auto-immune/rs3/6bfs-rs3/312k/free-energy
[DEBUG  ] Command line:
[DEBUG  ]   gmx make_ndx -n index.ndx -o _GMXMMPBSA_COM_index.ndx
[DEBUG  ] 
[DEBUG  ] 
[DEBUG  ] GROMACS reminds you: "The programmer got stuck in the shower because the instructions on the shampoo bottle said: Lather, Rinse, Repeat." (Anonymous)
[DEBUG  ] 
[DEBUG  ] Going to read 1 old index file(s)
[DEBUG  ] Counted atom numbers up to 167603 in index file
[DEBUG  ] 
[DEBUG  ]   0 System              : 167603 atoms
[DEBUG  ]   1 Protein             :  8611 atoms
[DEBUG  ]   2 Protein-H           :  4357 atoms
[DEBUG  ]   3 C-alpha             :   565 atoms
[DEBUG  ]   4 Backbone            :  1695 atoms
[DEBUG  ]   5 MainChain           :  2257 atoms
[DEBUG  ]   6 MainChain+Cb        :  2787 atoms
[DEBUG  ]   7 MainChain+H         :  2787 atoms
[DEBUG  ]   8 SideChain           :  5824 atoms
[DEBUG  ]   9 SideChain-H         :  2100 atoms
[DEBUG  ]  10 Prot-Masses         :  8611 atoms
[DEBUG  ]  11 non-Protein         : 158992 atoms
[DEBUG  ]  12 Water               : 158991 atoms
[DEBUG  ]  13 SOL                 : 158991 atoms
[DEBUG  ]  14 non-Water           :  8612 atoms
[DEBUG  ]  15 Ion                 :     1 atoms
[DEBUG  ]  16 CL                  :     1 atoms
[DEBUG  ]  17 Water_and_ions      : 158992 atoms
[DEBUG  ]  18 Chain_A             :  6595 atoms
[DEBUG  ]  19 Chain_B             :  2016 atoms
[DEBUG  ] 
[DEBUG  ]  nr : group      '!': not  'name' nr name   'splitch' nr    Enter: list groups
[DEBUG  ]  'a': atom       '&': and  'del' nr         'splitres' nr   'l': list residues
[DEBUG  ]  't': atom type  '|': or   'keep' nr        'splitat' nr    'h': help
[DEBUG  ]  'r': residue              'res' nr         'chain' char
[DEBUG  ]  "name": group             'case': case sensitive           'q': save and quit
[DEBUG  ]  'ri': residue index
[DEBUG  ] 
[DEBUG  ] > 
[DEBUG  ] 
[DEBUG  ] > 
[DEBUG  ] 
[DEBUG  ] > 
[DEBUG  ] Copied index group 18 'GMXMMPBSA_REC'
[DEBUG  ] Copied index group 19 'GMXMMPBSA_LIG'
[DEBUG  ] Merged two groups with OR: 6595 2016 -> 8611
[DEBUG  ] 
[DEBUG  ]  20 GMXMMPBSA_REC_GMXMMPBSA_LIG:  8611 atoms
[DEBUG  ] 
[DEBUG  ] > 
[INFO   ] Normal Complex: Saving group 18_19 in _GMXMMPBSA_COM_index.ndx file as _GMXMMPBSA_COM.pdb
[DEBUG  ] Running command: echo GMXMMPBSA_REC_GMXMMPBSA_LIG | /usr/local/gromacs/bin/gmx trjconv -f dynamic-nopbc-2.xtc -s md_1_30.tpr -o _GMXMMPBSA_COM.pdb -n _GMXMMPBSA_COM_index.ndx -dump 0
[DEBUG  ]                      :-) GROMACS - gmx trjconv, 2021.5 (-:
[DEBUG  ] 
[DEBUG  ]                             GROMACS is written by:
[DEBUG  ]      Andrey Alekseenko              Emile Apol              Rossen Apostolov     
[DEBUG  ]          Paul Bauer           Herman J.C. Berendsen           Par Bjelkmar       
[DEBUG  ]        Christian Blau           Viacheslav Bolnykh             Kevin Boyd        
[DEBUG  ]      Aldert van Buuren           Rudi van Drunen             Anton Feenstra      
[DEBUG  ]     Gilles Gouaillardet             Alan Gray               Gerrit Groenhof      
[DEBUG  ]        Anca Hamuraru            Vincent Hindriksen          M. Eric Irrgang      
[DEBUG  ]       Aleksei Iupinov           Christoph Junghans             Joe Jordan        
[DEBUG  ]     Dimitrios Karkoulis            Peter Kasson                Jiri Kraus        
[DEBUG  ]       Carsten Kutzner              Per Larsson              Justin A. Lemkul     
[DEBUG  ]        Viveca Lindahl            Magnus Lundborg             Erik Marklund       
[DEBUG  ]         Pascal Merz             Pieter Meulenhoff            Teemu Murtola       
[DEBUG  ]         Szilard Pall               Sander Pronk              Roland Schulz       
[DEBUG  ]        Michael Shirts            Alexey Shvetsov             Alfons Sijbers      
[DEBUG  ]        Peter Tieleman              Jon Vincent              Teemu Virolainen     
[DEBUG  ]      Christian Wennberg            Maarten Wolf              Artem Zhmurov       
[DEBUG  ]                            and the project leaders:
[DEBUG  ]         Mark Abraham, Berk Hess, Erik Lindahl, and David van der Spoel
[DEBUG  ] 
[DEBUG  ] Copyright (c) 1991-2000, University of Groningen, The Netherlands.
[DEBUG  ] Copyright (c) 2001-2019, The GROMACS development team at
[DEBUG  ] Uppsala University, Stockholm University and
[DEBUG  ] the Royal Institute of Technology, Sweden.
[DEBUG  ] check out http://www.gromacs.org for more information.
[DEBUG  ] 
[DEBUG  ] GROMACS is free software; you can redistribute it and/or modify it
[DEBUG  ] under the terms of the GNU Lesser General Public License
[DEBUG  ] as published by the Free Software Foundation; either version 2.1
[DEBUG  ] of the License, or (at your option) any later version.
[DEBUG  ] 
[DEBUG  ] GROMACS:      gmx trjconv, version 2021.5
[DEBUG  ] Executable:   /usr/local/gromacs/bin/gmx
[DEBUG  ] Data prefix:  /usr/local/gromacs
[DEBUG  ] Working dir:  /media/romi/My Book Duo/completed-simulation-oracle/auto-immune/rs3/6bfs-rs3/312k/free-energy
[DEBUG  ] Command line:
[DEBUG  ]   gmx trjconv -f dynamic-nopbc-2.xtc -s md_1_30.tpr -o _GMXMMPBSA_COM.pdb -n _GMXMMPBSA_COM_index.ndx -dump 0
[DEBUG  ] 
[DEBUG  ] Will write pdb: Protein data bank file
[DEBUG  ] Reading file md_1_30.tpr, VERSION 2019.6 (single precision)
[DEBUG  ] Reading file md_1_30.tpr, VERSION 2019.6 (single precision)
[DEBUG  ] Group     0 (         System) has 167603 elements
[DEBUG  ] Group     1 (        Protein) has  8611 elements
[DEBUG  ] Group     2 (      Protein-H) has  4357 elements
[DEBUG  ] Group     3 (        C-alpha) has   565 elements
[DEBUG  ] Group     4 (       Backbone) has  1695 elements
[DEBUG  ] Group     5 (      MainChain) has  2257 elements
[DEBUG  ] Group     6 (   MainChain+Cb) has  2787 elements
[DEBUG  ] Group     7 (    MainChain+H) has  2787 elements
[DEBUG  ] Group     8 (      SideChain) has  5824 elements
[DEBUG  ] Group     9 (    SideChain-H) has  2100 elements
[DEBUG  ] Group    10 (    Prot-Masses) has  8611 elements
[DEBUG  ] Group    11 (    non-Protein) has 158992 elements
[DEBUG  ] Group    12 (          Water) has 158991 elements
[DEBUG  ] Group    13 (            SOL) has 158991 elements
[DEBUG  ] Group    14 (      non-Water) has  8612 elements
[DEBUG  ] Group    15 (            Ion) has     1 elements
[DEBUG  ] Group    16 (             CL) has     1 elements
[DEBUG  ] Group    17 ( Water_and_ions) has 158992 elements
[DEBUG  ] Group    18 (  GMXMMPBSA_REC) has  6595 elements
[DEBUG  ] Group    19 (  GMXMMPBSA_LIG) has  2016 elements
[DEBUG  ] Group    20 (GMXMMPBSA_REC_GMXMMPBSA_LIG) has  8611 elements
[DEBUG  ] Select a group: Reading frame       0 time    0.000   
[DEBUG  ] Precision of dynamic-nopbc-2.xtc is 0.001 (nm)
[DEBUG  ] Reading frame       1 time   10.000   Reading frame       0 time    0.000   
[DEBUG  ] Dumping frame at t= 0 ps
[DEBUG  ]  ->  frame      0 time    0.000      Reading frame       1 time   10.000   
[DEBUG  ] 
[DEBUG  ] GROMACS reminds you: "The programmer got stuck in the shower because the instructions on the shampoo bottle said: Lather, Rinse, Repeat." (Anonymous)
[DEBUG  ] 
[DEBUG  ] Note that major changes are planned in future for trjconv, to improve usability and utility.
[DEBUG  ] Select group for output
[DEBUG  ] Selected 20: 'GMXMMPBSA_REC_GMXMMPBSA_LIG'
[INFO   ] No receptor structure file was defined. Using ST approach...
[INFO   ] Using receptor structure from complex to generate AMBER topology
[INFO   ] Normal Receptor: Saving group 18 in _GMXMMPBSA_COM_index.ndx file as _GMXMMPBSA_REC.pdb
[DEBUG  ] Running command: echo 18 | /usr/local/gromacs/bin/gmx trjconv -f dynamic-nopbc-2.xtc -s md_1_30.tpr -o _GMXMMPBSA_REC.pdb -n _GMXMMPBSA_COM_index.ndx -dump 0
[DEBUG  ]                      :-) GROMACS - gmx trjconv, 2021.5 (-:
[DEBUG  ] 
[DEBUG  ]                             GROMACS is written by:
[DEBUG  ]      Andrey Alekseenko              Emile Apol              Rossen Apostolov     
[DEBUG  ]          Paul Bauer           Herman J.C. Berendsen           Par Bjelkmar       
[DEBUG  ]        Christian Blau           Viacheslav Bolnykh             Kevin Boyd        
[DEBUG  ]      Aldert van Buuren           Rudi van Drunen             Anton Feenstra      
[DEBUG  ]     Gilles Gouaillardet             Alan Gray               Gerrit Groenhof      
[DEBUG  ]        Anca Hamuraru            Vincent Hindriksen          M. Eric Irrgang      
[DEBUG  ]       Aleksei Iupinov           Christoph Junghans             Joe Jordan        
[DEBUG  ]     Dimitrios Karkoulis            Peter Kasson                Jiri Kraus        
[DEBUG  ]       Carsten Kutzner              Per Larsson              Justin A. Lemkul     
[DEBUG  ]        Viveca Lindahl            Magnus Lundborg             Erik Marklund       
[DEBUG  ]         Pascal Merz             Pieter Meulenhoff            Teemu Murtola       
[DEBUG  ]         Szilard Pall               Sander Pronk              Roland Schulz       
[DEBUG  ]        Michael Shirts            Alexey Shvetsov             Alfons Sijbers      
[DEBUG  ]        Peter Tieleman              Jon Vincent              Teemu Virolainen     
[DEBUG  ]      Christian Wennberg            Maarten Wolf              Artem Zhmurov       
[DEBUG  ]                            and the project leaders:
[DEBUG  ]         Mark Abraham, Berk Hess, Erik Lindahl, and David van der Spoel
[DEBUG  ] 
[DEBUG  ] Copyright (c) 1991-2000, University of Groningen, The Netherlands.
[DEBUG  ] Copyright (c) 2001-2019, The GROMACS development team at
[DEBUG  ] Uppsala University, Stockholm University and
[DEBUG  ] the Royal Institute of Technology, Sweden.
[DEBUG  ] check out http://www.gromacs.org for more information.
[DEBUG  ] 
[DEBUG  ] GROMACS is free software; you can redistribute it and/or modify it
[DEBUG  ] under the terms of the GNU Lesser General Public License
[DEBUG  ] as published by the Free Software Foundation; either version 2.1
[DEBUG  ] of the License, or (at your option) any later version.
[DEBUG  ] 
[DEBUG  ] GROMACS:      gmx trjconv, version 2021.5
[DEBUG  ] Executable:   /usr/local/gromacs/bin/gmx
[DEBUG  ] Data prefix:  /usr/local/gromacs
[DEBUG  ] Working dir:  /media/romi/My Book Duo/completed-simulation-oracle/auto-immune/rs3/6bfs-rs3/312k/free-energy
[DEBUG  ] Command line:
[DEBUG  ]   gmx trjconv -f dynamic-nopbc-2.xtc -s md_1_30.tpr -o _GMXMMPBSA_REC.pdb -n _GMXMMPBSA_COM_index.ndx -dump 0
[DEBUG  ] 
[DEBUG  ] Will write pdb: Protein data bank file
[DEBUG  ] Reading file md_1_30.tpr, VERSION 2019.6 (single precision)
[DEBUG  ] Reading file md_1_30.tpr, VERSION 2019.6 (single precision)
[DEBUG  ] Group     0 (         System) has 167603 elements
[DEBUG  ] Group     1 (        Protein) has  8611 elements
[DEBUG  ] Group     2 (      Protein-H) has  4357 elements
[DEBUG  ] Group     3 (        C-alpha) has   565 elements
[DEBUG  ] Group     4 (       Backbone) has  1695 elements
[DEBUG  ] Group     5 (      MainChain) has  2257 elements
[DEBUG  ] Group     6 (   MainChain+Cb) has  2787 elements
[DEBUG  ] Group     7 (    MainChain+H) has  2787 elements
[DEBUG  ] Group     8 (      SideChain) has  5824 elements
[DEBUG  ] Group     9 (    SideChain-H) has  2100 elements
[DEBUG  ] Group    10 (    Prot-Masses) has  8611 elements
[DEBUG  ] Group    11 (    non-Protein) has 158992 elements
[DEBUG  ] Group    12 (          Water) has 158991 elements
[DEBUG  ] Group    13 (            SOL) has 158991 elements
[DEBUG  ] Group    14 (      non-Water) has  8612 elements
[DEBUG  ] Group    15 (            Ion) has     1 elements
[DEBUG  ] Group    16 (             CL) has     1 elements
[DEBUG  ] Group    17 ( Water_and_ions) has 158992 elements
[DEBUG  ] Group    18 (  GMXMMPBSA_REC) has  6595 elements
[DEBUG  ] Group    19 (  GMXMMPBSA_LIG) has  2016 elements
[DEBUG  ] Group    20 (GMXMMPBSA_REC_GMXMMPBSA_LIG) has  8611 elements
[DEBUG  ] Select a group: Reading frame       0 time    0.000   
[DEBUG  ] Precision of dynamic-nopbc-2.xtc is 0.001 (nm)
[DEBUG  ] Reading frame       1 time   10.000   Reading frame       0 time    0.000   
[DEBUG  ] Dumping frame at t= 0 ps
[DEBUG  ]  ->  frame      0 time    0.000      Reading frame       1 time   10.000   
[DEBUG  ] 
[DEBUG  ] GROMACS reminds you: "The programmer got stuck in the shower because the instructions on the shampoo bottle said: Lather, Rinse, Repeat." (Anonymous)
[DEBUG  ] 
[DEBUG  ] Note that major changes are planned in future for trjconv, to improve usability and utility.
[DEBUG  ] Select group for output
[DEBUG  ] Selected 18: 'GMXMMPBSA_REC'
[INFO   ] No ligand structure file was defined. Using ST approach...
[INFO   ] Using ligand structure from complex to generate AMBER topology
[INFO   ] Normal Ligand: Saving group 19 in _GMXMMPBSA_COM_index.ndx file as _GMXMMPBSA_LIG.pdb
[DEBUG  ] Running command: echo 19 | /usr/local/gromacs/bin/gmx trjconv -f dynamic-nopbc-2.xtc -s md_1_30.tpr -o _GMXMMPBSA_LIG.pdb -n _GMXMMPBSA_COM_index.ndx -dump 0
[DEBUG  ]                      :-) GROMACS - gmx trjconv, 2021.5 (-:
[DEBUG  ] 
[DEBUG  ]                             GROMACS is written by:
[DEBUG  ]      Andrey Alekseenko              Emile Apol              Rossen Apostolov     
[DEBUG  ]          Paul Bauer           Herman J.C. Berendsen           Par Bjelkmar       
[DEBUG  ]        Christian Blau           Viacheslav Bolnykh             Kevin Boyd        
[DEBUG  ]      Aldert van Buuren           Rudi van Drunen             Anton Feenstra      
[DEBUG  ]     Gilles Gouaillardet             Alan Gray               Gerrit Groenhof      
[DEBUG  ]        Anca Hamuraru            Vincent Hindriksen          M. Eric Irrgang      
[DEBUG  ]       Aleksei Iupinov           Christoph Junghans             Joe Jordan        
[DEBUG  ]     Dimitrios Karkoulis            Peter Kasson                Jiri Kraus        
[DEBUG  ]       Carsten Kutzner              Per Larsson              Justin A. Lemkul     
[DEBUG  ]        Viveca Lindahl            Magnus Lundborg             Erik Marklund       
[DEBUG  ]         Pascal Merz             Pieter Meulenhoff            Teemu Murtola       
[DEBUG  ]         Szilard Pall               Sander Pronk              Roland Schulz       
[DEBUG  ]        Michael Shirts            Alexey Shvetsov             Alfons Sijbers      
[DEBUG  ]        Peter Tieleman              Jon Vincent              Teemu Virolainen     
[DEBUG  ]      Christian Wennberg            Maarten Wolf              Artem Zhmurov       
[DEBUG  ]                            and the project leaders:
[DEBUG  ]         Mark Abraham, Berk Hess, Erik Lindahl, and David van der Spoel
[DEBUG  ] 
[DEBUG  ] Copyright (c) 1991-2000, University of Groningen, The Netherlands.
[DEBUG  ] Copyright (c) 2001-2019, The GROMACS development team at
[DEBUG  ] Uppsala University, Stockholm University and
[DEBUG  ] the Royal Institute of Technology, Sweden.
[DEBUG  ] check out http://www.gromacs.org for more information.
[DEBUG  ] 
[DEBUG  ] GROMACS is free software; you can redistribute it and/or modify it
[DEBUG  ] under the terms of the GNU Lesser General Public License
[DEBUG  ] as published by the Free Software Foundation; either version 2.1
[DEBUG  ] of the License, or (at your option) any later version.
[DEBUG  ] 
[DEBUG  ] GROMACS:      gmx trjconv, version 2021.5
[DEBUG  ] Executable:   /usr/local/gromacs/bin/gmx
[DEBUG  ] Data prefix:  /usr/local/gromacs
[DEBUG  ] Working dir:  /media/romi/My Book Duo/completed-simulation-oracle/auto-immune/rs3/6bfs-rs3/312k/free-energy
[DEBUG  ] Command line:
[DEBUG  ]   gmx trjconv -f dynamic-nopbc-2.xtc -s md_1_30.tpr -o _GMXMMPBSA_LIG.pdb -n _GMXMMPBSA_COM_index.ndx -dump 0
[DEBUG  ] 
[DEBUG  ] Will write pdb: Protein data bank file
[DEBUG  ] Reading file md_1_30.tpr, VERSION 2019.6 (single precision)
[DEBUG  ] Reading file md_1_30.tpr, VERSION 2019.6 (single precision)
[DEBUG  ] Group     0 (         System) has 167603 elements
[DEBUG  ] Group     1 (        Protein) has  8611 elements
[DEBUG  ] Group     2 (      Protein-H) has  4357 elements
[DEBUG  ] Group     3 (        C-alpha) has   565 elements
[DEBUG  ] Group     4 (       Backbone) has  1695 elements
[DEBUG  ] Group     5 (      MainChain) has  2257 elements
[DEBUG  ] Group     6 (   MainChain+Cb) has  2787 elements
[DEBUG  ] Group     7 (    MainChain+H) has  2787 elements
[DEBUG  ] Group     8 (      SideChain) has  5824 elements
[DEBUG  ] Group     9 (    SideChain-H) has  2100 elements
[DEBUG  ] Group    10 (    Prot-Masses) has  8611 elements
[DEBUG  ] Group    11 (    non-Protein) has 158992 elements
[DEBUG  ] Group    12 (          Water) has 158991 elements
[DEBUG  ] Group    13 (            SOL) has 158991 elements
[DEBUG  ] Group    14 (      non-Water) has  8612 elements
[DEBUG  ] Group    15 (            Ion) has     1 elements
[DEBUG  ] Group    16 (             CL) has     1 elements
[DEBUG  ] Group    17 ( Water_and_ions) has 158992 elements
[DEBUG  ] Group    18 (  GMXMMPBSA_REC) has  6595 elements
[DEBUG  ] Group    19 (  GMXMMPBSA_LIG) has  2016 elements
[DEBUG  ] Group    20 (GMXMMPBSA_REC_GMXMMPBSA_LIG) has  8611 elements
[DEBUG  ] Select a group: Reading frame       0 time    0.000   
[DEBUG  ] Precision of dynamic-nopbc-2.xtc is 0.001 (nm)
[DEBUG  ] Reading frame       1 time   10.000   Reading frame       0 time    0.000   
[DEBUG  ] Dumping frame at t= 0 ps
[DEBUG  ]  ->  frame      0 time    0.000      Reading frame       1 time   10.000   
[DEBUG  ] 
[DEBUG  ] GROMACS reminds you: "The programmer got stuck in the shower because the instructions on the shampoo bottle said: Lather, Rinse, Repeat." (Anonymous)
[DEBUG  ] 
[DEBUG  ] Note that major changes are planned in future for trjconv, to improve usability and utility.
[DEBUG  ] Select group for output
[DEBUG  ] Selected 19: 'GMXMMPBSA_LIG'
[INFO   ] Checking the structures consistency...
[INFO   ] 
[INFO   ] Using topology conversion. Setting radiopt = 0...
[INFO   ] Building Normal Complex Amber topology...
[INFO   ] Detected CHARMM force field topology format...
[INFO   ] Assigning PBRadii mbondi2 to Complex...
[INFO   ] Writing Normal Complex AMBER topology...
[INFO   ] No Receptor topology file was defined. Using ST approach...
[INFO   ] Building AMBER Receptor topology from Complex...
[INFO   ] Assigning PBRadii mbondi2 to Receptor...
[INFO   ] Writing Normal Receptor AMBER topology...
[INFO   ] No Ligand topology file was defined. Using ST approach...
[INFO   ] Building AMBER Ligand topology from Complex...
[INFO   ] Assigning PBRadii mbondi2 to Ligand...
[INFO   ] Writing Normal Ligand AMBER topology...
[INFO   ] Selecting residues by distance (6 Å) between receptor and ligand for decomposition analysis...
[INFO   ] Selected 74 residues:
R:A:ILE:2   R:A:HIS:24  R:A:ALA:25  R:A:SER:26  R:A:GLN:27  R:A:ASN:28  R:A:ILE:29  R:A:ASN:30  R:A:VAL:31  R:A:TRP:32
R:A:TYR:49  R:A:LYS:50  R:A:ASN:53  R:A:GLY:68  R:A:THR:69  R:A:GLN:90  R:A:GLY:91  R:A:GLN:92  R:A:SER:93  R:A:TYR:94
R:A:LEU:96  R:B:GLY:240 R:B:TYR:241 R:B:SER:242 R:B:PHE:243 R:B:THR:244 R:B:ASN:245 R:B:TYR:246 R:B:TYR:247 R:B:HIS:249
R:B:TRP:264 R:B:PHE:266 R:B:GLY:268 R:B:SER:269 R:B:ASN:271 R:B:THR:272 R:B:LYS:273 R:B:ARG:312 R:B:LYS:313 R:B:GLY:314
R:B:THR:315 R:B:THR:316 R:B:GLY:317 L:C:SER:447 L:C:TRP:451 L:C:VAL:480 L:C:ILE:481 L:C:GLU:483 L:C:THR:516 L:C:MET:517
L:C:MET:518 L:C:ALA:519 L:C:SER:520 L:C:HIS:521 L:C:PHE:544 L:C:LYS:545 L:C:GLU:546 L:C:ASN:547 L:C:LEU:548 L:C:LYS:549
L:C:ASP:550 L:C:PHE:551 L:C:LEU:552 L:C:LEU:553 L:C:VAL:554 L:C:ILE:555 L:C:PRO:556 L:C:PHE:557 L:C:TRP:560 L:C:GLU:561
L:C:PRO:562 L:C:VAL:563 L:C:GLN:564 L:C:GLU:565

[INFO   ] Cleaning normal complex trajectories...
[DEBUG  ] Running command: echo GMXMMPBSA_REC_GMXMMPBSA_LIG | /usr/local/gromacs/bin/gmx trjconv -f dynamic-nopbc-2.xtc -s md_1_30.tpr -o COM_traj_0.xtc -n _GMXMMPBSA_COM_index.ndx
[DEBUG  ]                      :-) GROMACS - gmx trjconv, 2021.5 (-:
[DEBUG  ] 
[DEBUG  ]                             GROMACS is written by:
[DEBUG  ]      Andrey Alekseenko              Emile Apol              Rossen Apostolov     
[DEBUG  ]          Paul Bauer           Herman J.C. Berendsen           Par Bjelkmar       
[DEBUG  ]        Christian Blau           Viacheslav Bolnykh             Kevin Boyd        
[DEBUG  ]      Aldert van Buuren           Rudi van Drunen             Anton Feenstra      
[DEBUG  ]     Gilles Gouaillardet             Alan Gray               Gerrit Groenhof      
[DEBUG  ]        Anca Hamuraru            Vincent Hindriksen          M. Eric Irrgang      
[DEBUG  ]       Aleksei Iupinov           Christoph Junghans             Joe Jordan        
[DEBUG  ]     Dimitrios Karkoulis            Peter Kasson                Jiri Kraus        
[DEBUG  ]       Carsten Kutzner              Per Larsson              Justin A. Lemkul     
[DEBUG  ]        Viveca Lindahl            Magnus Lundborg             Erik Marklund       
[DEBUG  ]         Pascal Merz             Pieter Meulenhoff            Teemu Murtola       
[DEBUG  ]         Szilard Pall               Sander Pronk              Roland Schulz       
[DEBUG  ]        Michael Shirts            Alexey Shvetsov             Alfons Sijbers      
[DEBUG  ]        Peter Tieleman              Jon Vincent              Teemu Virolainen     
[DEBUG  ]      Christian Wennberg            Maarten Wolf              Artem Zhmurov       
[DEBUG  ]                            and the project leaders:
[DEBUG  ]         Mark Abraham, Berk Hess, Erik Lindahl, and David van der Spoel
[DEBUG  ] 
[DEBUG  ] Copyright (c) 1991-2000, University of Groningen, The Netherlands.
[DEBUG  ] Copyright (c) 2001-2019, The GROMACS development team at
[DEBUG  ] Uppsala University, Stockholm University and
[DEBUG  ] the Royal Institute of Technology, Sweden.
[DEBUG  ] check out http://www.gromacs.org for more information.
[DEBUG  ] 
[DEBUG  ] GROMACS is free software; you can redistribute it and/or modify it
[DEBUG  ] under the terms of the GNU Lesser General Public License
[DEBUG  ] as published by the Free Software Foundation; either version 2.1
[DEBUG  ] of the License, or (at your option) any later version.
[DEBUG  ] 
[DEBUG  ] GROMACS:      gmx trjconv, version 2021.5
[DEBUG  ] Executable:   /usr/local/gromacs/bin/gmx
[DEBUG  ] Data prefix:  /usr/local/gromacs
[DEBUG  ] Working dir:  /media/romi/My Book Duo/completed-simulation-oracle/auto-immune/rs3/6bfs-rs3/312k/free-energy
[DEBUG  ] Command line:
[DEBUG  ]   gmx trjconv -f dynamic-nopbc-2.xtc -s md_1_30.tpr -o COM_traj_0.xtc -n _GMXMMPBSA_COM_index.ndx
[DEBUG  ] 
[DEBUG  ] Will write xtc: Compressed trajectory (portable xdr format): xtc
[DEBUG  ] Reading file md_1_30.tpr, VERSION 2019.6 (single precision)
[DEBUG  ] Reading file md_1_30.tpr, VERSION 2019.6 (single precision)
[DEBUG  ] Group     0 (         System) has 167603 elements
[DEBUG  ] Group     1 (        Protein) has  8611 elements
[DEBUG  ] Group     2 (      Protein-H) has  4357 elements
[DEBUG  ] Group     3 (        C-alpha) has   565 elements
[DEBUG  ] Group     4 (       Backbone) has  1695 elements
[DEBUG  ] Group     5 (      MainChain) has  2257 elements
[DEBUG  ] Group     6 (   MainChain+Cb) has  2787 elements
[DEBUG  ] Group     7 (    MainChain+H) has  2787 elements
[DEBUG  ] Group     8 (      SideChain) has  5824 elements
[DEBUG  ] Group     9 (    SideChain-H) has  2100 elements
[DEBUG  ] Group    10 (    Prot-Masses) has  8611 elements
[DEBUG  ] Group    11 (    non-Protein) has 158992 elements
[DEBUG  ] Group    12 (          Water) has 158991 elements
[DEBUG  ] Group    13 (            SOL) has 158991 elements
[DEBUG  ] Group    14 (      non-Water) has  8612 elements
[DEBUG  ] Group    15 (            Ion) has     1 elements
[DEBUG  ] Group    16 (             CL) has     1 elements
[DEBUG  ] Group    17 ( Water_and_ions) has 158992 elements
[DEBUG  ] Group    18 (  GMXMMPBSA_REC) has  6595 elements
[DEBUG  ] Group    19 (  GMXMMPBSA_LIG) has  2016 elements
[DEBUG  ] Group    20 (GMXMMPBSA_REC_GMXMMPBSA_LIG) has  8611 elements
[DEBUG  ] Select a group: Reading frame       0 time    0.000   
[DEBUG  ] Precision of dynamic-nopbc-2.xtc is 0.001 (nm)
[DEBUG  ] Using output precision of 0.001 (nm)
[DEBUG  ]  ->  frame      0 time    0.000      Reading frame       1 time   10.000    ->  frame      1 time   10.000      Reading frame       2 time   20.000    ->  frame      2 time   20.000      Reading frame       3 time   30.000    ->  frame      3 time   30.000      Reading frame       4 time   40.000    ->  frame      4 time   40.000      Reading frame       5 time   50.000    ->  frame      5 time   50.000      Reading frame       6 time   60.000    ->  frame      6 time   60.000      Reading frame       7 time   70.000    ->  frame      7 time   70.000      Reading frame       8 time   80.000    ->  frame      8 time   80.000      Reading frame       9 time   90.000    ->  frame      9 time   90.000      Reading frame      10 time  100.000    ->  frame     10 time  100.000      Reading frame      11 time  110.000   Reading frame      12 time  120.000   Reading frame      13 time  130.000   Reading frame      14 time  140.000   Reading frame      15 time  150.000   Reading frame      16 time  160.000   Reading frame      17 time  170.000   Reading frame      18 time  180.000   Reading frame      19 time  190.000   Reading frame      20 time  200.000    ->  frame     20 time  200.000      Reading frame      30 time  300.000    ->  frame     30 time  300.000      Reading frame      40 time  400.000    ->  frame     40 time  400.000      Reading frame      50 time  500.000    ->  frame     50 time  500.000      Reading frame      60 time  600.000    ->  frame     60 time  600.000      Reading frame      70 time  700.000    ->  frame     70 time  700.000      Reading frame      80 time  800.000    ->  frame     80 time  800.000      Reading frame      90 time  900.000    ->  frame     90 time  900.000      Reading frame     100 time 1000.000    ->  frame    100 time 1000.000      Reading frame     110 time 1100.000    ->  frame    110 time 1100.000      Reading frame     120 time 1200.000    ->  frame    120 time 1200.000      Reading frame     130 time 1300.000    ->  frame    130 time 1300.000      Reading frame     140 time 1400.000    ->  frame    140 time 1400.000      Reading frame     150 time 1500.000    ->  frame    150 time 1500.000      Reading frame     160 time 1600.000    ->  frame    160 time 1600.000      Reading frame     170 time 1700.000    ->  frame    170 time 1700.000      Reading frame     180 time 1800.000    ->  frame    180 time 1800.000      Reading frame     190 time 1900.000    ->  frame    190 time 1900.000      Reading frame     200 time 2000.000    ->  frame    200 time 2000.000       ->  frame    210 time 2100.000       ->  frame    220 time 2200.000       ->  frame    230 time 2300.000       ->  frame    240 time 2400.000       ->  frame    250 time 2500.000       ->  frame    260 time 2600.000       ->  frame    270 time 2700.000       ->  frame    280 time 2800.000       ->  frame    290 time 2900.000      Reading frame     300 time 3000.000    ->  frame    300 time 3000.000       ->  frame    310 time 3100.000       ->  frame    320 time 3200.000       ->  frame    330 time 3300.000       ->  frame    340 time 3400.000       ->  frame    350 time 3500.000       ->  frame    360 time 3600.000       ->  frame    370 time 3700.000       ->  frame    380 time 3800.000       ->  frame    390 time 3900.000      Reading frame     400 time 4000.000    ->  frame    400 time 4000.000       ->  frame    410 time 4100.000       ->  frame    420 time 4200.000       ->  frame    430 time 4300.000       ->  frame    440 time 4400.000       ->  frame    450 time 4500.000       ->  frame    460 time 4600.000       ->  frame    470 time 4700.000       ->  frame    480 time 4800.000       ->  frame    490 time 4900.000      Reading frame     500 time 5000.000    ->  frame    500 time 5000.000       ->  frame    510 time 5100.000       ->  frame    520 time 5200.000       ->  frame    530 time 5300.000       ->  frame    540 time 5400.000       ->  frame    550 time 5500.000       ->  frame    560 time 5600.000       ->  frame    570 time 5700.000       ->  frame    580 time 5800.000       ->  frame    590 time 5900.000      Reading frame     600 time 6000.000    ->  frame    600 time 6000.000       ->  frame    610 time 6100.000       ->  frame    620 time 6200.000       ->  frame    630 time 6300.000       ->  frame    640 time 6400.000       ->  frame    650 time 6500.000       ->  frame    660 time 6600.000       ->  frame    670 time 6700.000       ->  frame    680 time 6800.000       ->  frame    690 time 6900.000      Reading frame     700 time 7000.000    ->  frame    700 time 7000.000       ->  frame    710 time 7100.000       ->  frame    720 time 7200.000       ->  frame    730 time 7300.000       ->  frame    740 time 7400.000       ->  frame    750 time 7500.000       ->  frame    760 time 7600.000       ->  frame    770 time 7700.000       ->  frame    780 time 7800.000       ->  frame    790 time 7900.000      Reading frame     800 time 8000.000    ->  frame    800 time 8000.000       ->  frame    810 time 8100.000       ->  frame    820 time 8200.000       ->  frame    830 time 8300.000       ->  frame    840 time 8400.000       ->  frame    850 time 8500.000       ->  frame    860 time 8600.000       ->  frame    870 time 8700.000       ->  frame    880 time 8800.000       ->  frame    890 time 8900.000      Reading frame     900 time 9000.000    ->  frame    900 time 9000.000       ->  frame    910 time 9100.000       ->  frame    920 time 9200.000       ->  frame    930 time 9300.000       ->  frame    940 time 9400.000       ->  frame    950 time 9500.000       ->  frame    960 time 9600.000       ->  frame    970 time 9700.000       ->  frame    980 time 9800.000       ->  frame    990 time 9900.000      Reading frame    1000 time 10000.000    ->  frame   1000 time 10000.000       ->  frame   1010 time 10100.000       ->  frame   1020 time 10200.000       ->  frame   1030 time 10300.000       ->  frame   1040 time 10400.000       ->  frame   1050 time 10500.000       ->  frame   1060 time 10600.000       ->  frame   1070 time 10700.000       ->  frame   1080 time 10800.000       ->  frame   1090 time 10900.000      Reading frame    1100 time 11000.000    ->  frame   1100 time 11000.000       ->  frame   1110 time 11100.000       ->  frame   1120 time 11200.000       ->  frame   1130 time 11300.000       ->  frame   1140 time 11400.000       ->  frame   1150 time 11500.000       ->  frame   1160 time 11600.000       ->  frame   1170 time 11700.000       ->  frame   1180 time 11800.000       ->  frame   1190 time 11900.000      Reading frame    1200 time 12000.000    ->  frame   1200 time 12000.000       ->  frame   1210 time 12100.000       ->  frame   1220 time 12200.000       ->  frame   1230 time 12300.000       ->  frame   1240 time 12400.000       ->  frame   1250 time 12500.000       ->  frame   1260 time 12600.000       ->  frame   1270 time 12700.000       ->  frame   1280 time 12800.000       ->  frame   1290 time 12900.000      Reading frame    1300 time 13000.000    ->  frame   1300 time 13000.000       ->  frame   1310 time 13100.000       ->  frame   1320 time 13200.000       ->  frame   1330 time 13300.000       ->  frame   1340 time 13400.000       ->  frame   1350 time 13500.000       ->  frame   1360 time 13600.000       ->  frame   1370 time 13700.000       ->  frame   1380 time 13800.000       ->  frame   1390 time 13900.000      Reading frame    1400 time 14000.000    ->  frame   1400 time 14000.000       ->  frame   1410 time 14100.000       ->  frame   1420 time 14200.000       ->  frame   1430 time 14300.000       ->  frame   1440 time 14400.000       ->  frame   1450 time 14500.000       ->  frame   1460 time 14600.000       ->  frame   1470 time 14700.000       ->  frame   1480 time 14800.000       ->  frame   1490 time 14900.000      Reading frame    1500 time 15000.000    ->  frame   1500 time 15000.000       ->  frame   1510 time 15100.000       ->  frame   1520 time 15200.000       ->  frame   1530 time 15300.000       ->  frame   1540 time 15400.000       ->  frame   1550 time 15500.000       ->  frame   1560 time 15600.000       ->  frame   1570 time 15700.000       ->  frame   1580 time 15800.000       ->  frame   1590 time 15900.000      Reading frame    1600 time 16000.000    ->  frame   1600 time 16000.000       ->  frame   1610 time 16100.000       ->  frame   1620 time 16200.000       ->  frame   1630 time 16300.000       ->  frame   1640 time 16400.000       ->  frame   1650 time 15850.000       ->  frame   1660 time 15950.000       ->  frame   1670 time 16050.000       ->  frame   1680 time 16150.000       ->  frame   1690 time 16250.000      Reading frame    1700 time 16350.000    ->  frame   1700 time 16350.000       ->  frame   1710 time 16450.000       ->  frame   1720 time 16550.000       ->  frame   1730 time 16650.000       ->  frame   1740 time 16750.000       ->  frame   1750 time 16850.000       ->  frame   1760 time 16950.000       ->  frame   1770 time 17050.000       ->  frame   1780 time 17150.000       ->  frame   1790 time 17250.000      Reading frame    1800 time 17350.000    ->  frame   1800 time 17350.000       ->  frame   1810 time 17450.000       ->  frame   1820 time 17550.000       ->  frame   1830 time 17650.000       ->  frame   1840 time 17750.000       ->  frame   1850 time 17850.000       ->  frame   1860 time 17950.000       ->  frame   1870 time 18050.000       ->  frame   1880 time 18150.000       ->  frame   1890 time 18250.000      Reading frame    1900 time 18350.000    ->  frame   1900 time 18350.000       ->  frame   1910 time 18450.000       ->  frame   1920 time 18550.000       ->  frame   1930 time 18650.000       ->  frame   1940 time 18750.000       ->  frame   1950 time 18850.000       ->  frame   1960 time 18950.000       ->  frame   1970 time 19050.000       ->  frame   1980 time 19150.000       ->  frame   1990 time 19250.000      Reading frame    2000 time 19350.000    ->  frame   2000 time 19350.000       ->  frame   2010 time 19450.000       ->  frame   2020 time 19550.000       ->  frame   2030 time 19650.000       ->  frame   2040 time 19750.000       ->  frame   2050 time 19850.000       ->  frame   2060 time 19950.000       ->  frame   2070 time 20050.000       ->  frame   2080 time 20150.000       ->  frame   2090 time 20250.000       ->  frame   2100 time 20350.000       ->  frame   2110 time 20450.000       ->  frame   2120 time 20550.000       ->  frame   2130 time 20650.000       ->  frame   2140 time 20750.000       ->  frame   2150 time 20850.000       ->  frame   2160 time 20950.000       ->  frame   2170 time 21050.000       ->  frame   2180 time 21150.000       ->  frame   2190 time 21250.000       ->  frame   2200 time 21350.000       ->  frame   2210 time 21450.000       ->  frame   2220 time 21550.000       ->  frame   2230 time 21650.000       ->  frame   2240 time 21750.000       ->  frame   2250 time 21850.000       ->  frame   2260 time 21950.000       ->  frame   2270 time 22050.000       ->  frame   2280 time 22150.000       ->  frame   2290 time 22250.000       ->  frame   2300 time 22350.000       ->  frame   2310 time 22450.000       ->  frame   2320 time 22550.000       ->  frame   2330 time 22650.000       ->  frame   2340 time 22750.000       ->  frame   2350 time 22850.000       ->  frame   2360 time 22950.000       ->  frame   2370 time 23050.000       ->  frame   2380 time 23150.000       ->  frame   2390 time 23250.000       ->  frame   2400 time 23350.000       ->  frame   2410 time 23450.000       ->  frame   2420 time 23550.000       ->  frame   2430 time 23650.000       ->  frame   2440 time 23750.000       ->  frame   2450 time 23850.000       ->  frame   2460 time 23950.000       ->  frame   2470 time 24050.000       ->  frame   2480 time 24150.000       ->  frame   2490 time 24250.000       ->  frame   2500 time 24350.000       ->  frame   2510 time 24450.000       ->  frame   2520 time 24550.000       ->  frame   2530 time 24650.000       ->  frame   2540 time 24750.000       ->  frame   2550 time 24850.000       ->  frame   2560 time 24950.000       ->  frame   2570 time 25050.000       ->  frame   2580 time 25150.000       ->  frame   2590 time 25250.000       ->  frame   2600 time 25350.000       ->  frame   2610 time 25450.000       ->  frame   2620 time 25550.000       ->  frame   2630 time 25650.000       ->  frame   2640 time 25750.000       ->  frame   2650 time 25850.000       ->  frame   2660 time 25950.000       ->  frame   2670 time 26050.000       ->  frame   2680 time 26150.000       ->  frame   2690 time 26250.000       ->  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28850.000       ->  frame   2960 time 28950.000       ->  frame   2970 time 29050.000       ->  frame   2980 time 29150.000       ->  frame   2990 time 29250.000      Reading frame    3000 time 29350.000    ->  frame   3000 time 29350.000       ->  frame   3010 time 29450.000       ->  frame   3020 time 29550.000       ->  frame   3030 time 29650.000       ->  frame   3040 time 29750.000       ->  frame   3050 time 29850.000       ->  frame   3060 time 29950.000       ->  frame   3070 time 30050.000       ->  frame   3080 time 30150.000       ->  frame   3090 time 30250.000       ->  frame   3100 time 30350.000       ->  frame   3110 time 30450.000       ->  frame   3120 time 30550.000       ->  frame   3130 time 30650.000       ->  frame   3140 time 30750.000       ->  frame   3150 time 30850.000       ->  frame   3160 time 30950.000       ->  frame   3170 time 31050.000       ->  frame   3180 time 31150.000       ->  frame   3190 time 31250.000       ->  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33850.000       ->  frame   3460 time 33950.000       ->  frame   3470 time 34050.000       ->  frame   3480 time 34150.000       ->  frame   3490 time 34250.000       ->  frame   3500 time 34350.000       ->  frame   3510 time 34450.000       ->  frame   3520 time 34550.000       ->  frame   3530 time 34650.000       ->  frame   3540 time 34750.000       ->  frame   3550 time 34850.000       ->  frame   3560 time 34950.000       ->  frame   3570 time 35050.000       ->  frame   3580 time 35150.000       ->  frame   3590 time 35250.000       ->  frame   3600 time 35350.000       ->  frame   3610 time 35450.000       ->  frame   3620 time 35550.000       ->  frame   3630 time 35650.000       ->  frame   3640 time 35750.000       ->  frame   3650 time 35850.000       ->  frame   3660 time 35950.000       ->  frame   3670 time 36050.000       ->  frame   3680 time 36150.000       ->  frame   3690 time 36250.000       ->  frame   3700 time 36350.000       ->  frame   3710 time 36450.000       ->  frame   3720 time 36550.000       ->  frame   3730 time 36650.000       ->  frame   3740 time 36750.000       ->  frame   3750 time 36850.000       ->  frame   3760 time 36950.000       ->  frame   3770 time 37050.000       ->  frame   3780 time 37150.000       ->  frame   3790 time 37250.000       ->  frame   3800 time 37350.000       ->  frame   3810 time 37450.000       ->  frame   3820 time 37550.000       ->  frame   3830 time 37650.000       ->  frame   3840 time 37750.000       ->  frame   3850 time 37850.000       ->  frame   3860 time 37950.000       ->  frame   3870 time 38050.000       ->  frame   3880 time 38150.000       ->  frame   3890 time 38250.000       ->  frame   3900 time 38350.000       ->  frame   3910 time 38450.000       ->  frame   3920 time 38550.000       ->  frame   3930 time 38650.000       ->  frame   3940 time 38750.000       ->  frame   3950 time 38850.000       ->  frame   3960 time 38950.000       ->  frame   3970 time 39050.000       ->  frame   3980 time 39150.000       ->  frame   3990 time 39250.000      Reading frame    4000 time 39350.000    ->  frame   4000 time 39350.000       ->  frame   4010 time 39450.000       ->  frame   4020 time 39550.000       ->  frame   4030 time 39650.000       ->  frame   4040 time 39750.000       ->  frame   4050 time 39850.000       ->  frame   4060 time 39950.000       ->  frame   4070 time 40050.000       ->  frame   4080 time 40150.000       ->  frame   4090 time 40250.000       ->  frame   4100 time 40350.000       ->  frame   4110 time 40450.000       ->  frame   4120 time 40550.000       ->  frame   4130 time 40650.000       ->  frame   4140 time 40750.000       ->  frame   4150 time 40850.000       ->  frame   4160 time 40950.000       ->  frame   4170 time 41050.000       ->  frame   4180 time 41150.000       ->  frame   4190 time 41250.000       ->  frame   4200 time 41350.000       ->  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43950.000       ->  frame   4470 time 44050.000       ->  frame   4480 time 44150.000       ->  frame   4490 time 44250.000       ->  frame   4500 time 44350.000       ->  frame   4510 time 44450.000       ->  frame   4520 time 44550.000       ->  frame   4530 time 44650.000       ->  frame   4540 time 44750.000       ->  frame   4550 time 44850.000       ->  frame   4560 time 44950.000       ->  frame   4570 time 45050.000       ->  frame   4580 time 45150.000       ->  frame   4590 time 45250.000       ->  frame   4600 time 45350.000       ->  frame   4610 time 45450.000       ->  frame   4620 time 45550.000       ->  frame   4630 time 45650.000       ->  frame   4640 time 45750.000       ->  frame   4650 time 45850.000       ->  frame   4660 time 45950.000       ->  frame   4670 time 46050.000       ->  frame   4680 time 46150.000       ->  frame   4690 time 46250.000       ->  frame   4700 time 46350.000       ->  frame   4710 time 46450.000       ->  frame   4720 time 46550.000       ->  frame   4730 time 46650.000       ->  frame   4740 time 46750.000       ->  frame   4750 time 46850.000       ->  frame   4760 time 46950.000       ->  frame   4770 time 47050.000       ->  frame   4780 time 47150.000       ->  frame   4790 time 47250.000       ->  frame   4800 time 47350.000       ->  frame   4810 time 47450.000       ->  frame   4820 time 47550.000       ->  frame   4830 time 47650.000       ->  frame   4840 time 47750.000       ->  frame   4850 time 47850.000       ->  frame   4860 time 47950.000       ->  frame   4870 time 48050.000       ->  frame   4880 time 48150.000       ->  frame   4890 time 48250.000       ->  frame   4900 time 48350.000       ->  frame   4910 time 48450.000       ->  frame   4920 time 48550.000       ->  frame   4930 time 48650.000       ->  frame   4940 time 48750.000       ->  frame   4950 time 48850.000       ->  frame   4960 time 48950.000       ->  frame   4970 time 49050.000       ->  frame   4980 time 49150.000       ->  frame   4990 time 49250.000      Reading frame    5000 time 49350.000    ->  frame   5000 time 49350.000       ->  frame   5010 time 49450.000       ->  frame   5020 time 49550.000       ->  frame   5030 time 49650.000       ->  frame   5040 time 49750.000       ->  frame   5050 time 49850.000       ->  frame   5060 time 49950.000       ->  frame   5070 time 50050.000       ->  frame   5080 time 50150.000       ->  frame   5090 time 50250.000       ->  frame   5100 time 50350.000       ->  frame   5110 time 50450.000       ->  frame   5120 time 50550.000       ->  frame   5130 time 50650.000       ->  frame   5140 time 50750.000       ->  frame   5150 time 50850.000       ->  frame   5160 time 50950.000       ->  frame   5170 time 51050.000       ->  frame   5180 time 51150.000       ->  frame   5190 time 51250.000       ->  frame   5200 time 51350.000       ->  frame   5210 time 51450.000       ->  frame   5220 time 51550.000       ->  frame   5230 time 51650.000       ->  frame   5240 time 51750.000       ->  frame   5250 time 51850.000       ->  frame   5260 time 51950.000       ->  frame   5270 time 52050.000       ->  frame   5280 time 52150.000       ->  frame   5290 time 52250.000       ->  frame   5300 time 52350.000       ->  frame   5310 time 52450.000       ->  frame   5320 time 52550.000       ->  frame   5330 time 52650.000       ->  frame   5340 time 52750.000       ->  frame   5350 time 52850.000       ->  frame   5360 time 52950.000       ->  frame   5370 time 53050.000       ->  frame   5380 time 53150.000       ->  frame   5390 time 53250.000       ->  frame   5400 time 53350.000       ->  frame   5410 time 53450.000       ->  frame   5420 time 53550.000       ->  frame   5430 time 53650.000       ->  frame   5440 time 53750.000       ->  frame   5450 time 53850.000       ->  frame   5460 time 53950.000       ->  frame   5470 time 54050.000       ->  frame   5480 time 54150.000       ->  frame   5490 time 54250.000       ->  frame   5500 time 54350.000       ->  frame   5510 time 54450.000       ->  frame   5520 time 54550.000       ->  frame   5530 time 54650.000       ->  frame   5540 time 54750.000       ->  frame   5550 time 54850.000       ->  frame   5560 time 54950.000       ->  frame   5570 time 55050.000       ->  frame   5580 time 55150.000       ->  frame   5590 time 55250.000       ->  frame   5600 time 55350.000       ->  frame   5610 time 55450.000       ->  frame   5620 time 55550.000       ->  frame   5630 time 55650.000       ->  frame   5640 time 55750.000       ->  frame   5650 time 55850.000       ->  frame   5660 time 55950.000       ->  frame   5670 time 56050.000       ->  frame   5680 time 56150.000       ->  frame   5690 time 56250.000       ->  frame   5700 time 56350.000       ->  frame   5710 time 56450.000       ->  frame   5720 time 56550.000       ->  frame   5730 time 56650.000       ->  frame   5740 time 56750.000       ->  frame   5750 time 56850.000       ->  frame   5760 time 56950.000       ->  frame   5770 time 57050.000       ->  frame   5780 time 57150.000       ->  frame   5790 time 57250.000       ->  frame   5800 time 57350.000       ->  frame   5810 time 57450.000       ->  frame   5820 time 57550.000       ->  frame   5830 time 57650.000       ->  frame   5840 time 57750.000       ->  frame   5850 time 57850.000       ->  frame   5860 time 57950.000       ->  frame   5870 time 58050.000       ->  frame   5880 time 58150.000       ->  frame   5890 time 58250.000       ->  frame   5900 time 58350.000       ->  frame   5910 time 58450.000       ->  frame   5920 time 58550.000       ->  frame   5930 time 58650.000       ->  frame   5940 time 58750.000       ->  frame   5950 time 58850.000       ->  frame   5960 time 58950.000       ->  frame   5970 time 59050.000       ->  frame   5980 time 59150.000       ->  frame   5990 time 59250.000      Reading frame    6000 time 59350.000    ->  frame   6000 time 59350.000       ->  frame   6010 time 59450.000       ->  frame   6020 time 59550.000       ->  frame   6030 time 59650.000       ->  frame   6040 time 59750.000       ->  frame   6050 time 59850.000       ->  frame   6060 time 59950.000       ->  frame   6070 time 60050.000       ->  frame   6080 time 60150.000       ->  frame   6090 time 60250.000       ->  frame   6100 time 60350.000       ->  frame   6110 time 60450.000       ->  frame   6120 time 60550.000       ->  frame   6130 time 60650.000       ->  frame   6140 time 60750.000       ->  frame   6150 time 60850.000       ->  frame   6160 time 60950.000       ->  frame   6170 time 61050.000       ->  frame   6180 time 61150.000       ->  frame   6190 time 61250.000       ->  frame   6200 time 61350.000       ->  frame   6210 time 61450.000       ->  frame   6220 time 61550.000       ->  frame   6230 time 61650.000       ->  frame   6240 time 61750.000       ->  frame   6250 time 61850.000       ->  frame   6260 time 61950.000       ->  frame   6270 time 62050.000       ->  frame   6280 time 62150.000       ->  frame   6290 time 62250.000       ->  frame   6300 time 62350.000       ->  frame   6310 time 62450.000       ->  frame   6320 time 62550.000       ->  frame   6330 time 62650.000       ->  frame   6340 time 62750.000       ->  frame   6350 time 62850.000       ->  frame   6360 time 62950.000       ->  frame   6370 time 63050.000       ->  frame   6380 time 63150.000       ->  frame   6390 time 63250.000       ->  frame   6400 time 63350.000       ->  frame   6410 time 63450.000       ->  frame   6420 time 63550.000       ->  frame   6430 time 63650.000       ->  frame   6440 time 63750.000       ->  frame   6450 time 63850.000       ->  frame   6460 time 63950.000       ->  frame   6470 time 64050.000       ->  frame   6480 time 64150.000       ->  frame   6490 time 64250.000       ->  frame   6500 time 64350.000       ->  frame   6510 time 64450.000       ->  frame   6520 time 64550.000       ->  frame   6530 time 64650.000       ->  frame   6540 time 64750.000       ->  frame   6550 time 64850.000       ->  frame   6560 time 64950.000       ->  frame   6570 time 65050.000       ->  frame   6580 time 65150.000       ->  frame   6590 time 65250.000       ->  frame   6600 time 65350.000       ->  frame   6610 time 65450.000       ->  frame   6620 time 65550.000       ->  frame   6630 time 65650.000       ->  frame   6640 time 65750.000       ->  frame   6650 time 65850.000       ->  frame   6660 time 65950.000       ->  frame   6670 time 66050.000       ->  frame   6680 time 66150.000       ->  frame   6690 time 66250.000       ->  frame   6700 time 66350.000       ->  frame   6710 time 66450.000       ->  frame   6720 time 66550.000       ->  frame   6730 time 66650.000       ->  frame   6740 time 66750.000       ->  frame   6750 time 66850.000       ->  frame   6760 time 66950.000       ->  frame   6770 time 67050.000       ->  frame   6780 time 67150.000       ->  frame   6790 time 67250.000       ->  frame   6800 time 67350.000       ->  frame   6810 time 67450.000       ->  frame   6820 time 67550.000       ->  frame   6830 time 67650.000       ->  frame   6840 time 67750.000       ->  frame   6850 time 67850.000       ->  frame   6860 time 67950.000       ->  frame   6870 time 68050.000       ->  frame   6880 time 68150.000       ->  frame   6890 time 68250.000       ->  frame   6900 time 68350.000       ->  frame   6910 time 68450.000       ->  frame   6920 time 68550.000       ->  frame   6930 time 68650.000       ->  frame   6940 time 68750.000       ->  frame   6950 time 68850.000       ->  frame   6960 time 68950.000       ->  frame   6970 time 69050.000       ->  frame   6980 time 69150.000       ->  frame   6990 time 69250.000      Reading frame    7000 time 69350.000    ->  frame   7000 time 69350.000       ->  frame   7010 time 69450.000       ->  frame   7020 time 69550.000       ->  frame   7030 time 69650.000       ->  frame   7040 time 69750.000       ->  frame   7050 time 69850.000       ->  frame   7060 time 69950.000       ->  frame   7070 time 70050.000       ->  frame   7080 time 70150.000       ->  frame   7090 time 70250.000       ->  frame   7100 time 70350.000       ->  frame   7110 time 70450.000       ->  frame   7120 time 70550.000       ->  frame   7130 time 70650.000       ->  frame   7140 time 70750.000       ->  frame   7150 time 70850.000       ->  frame   7160 time 70950.000       ->  frame   7170 time 71050.000       ->  frame   7180 time 71150.000       ->  frame   7190 time 71250.000       ->  frame   7200 time 71350.000       ->  frame   7210 time 71450.000       ->  frame   7220 time 71550.000       ->  frame   7230 time 71650.000       ->  frame   7240 time 71750.000       ->  frame   7250 time 71850.000       ->  frame   7260 time 71950.000       ->  frame   7270 time 72050.000       ->  frame   7280 time 72150.000       ->  frame   7290 time 72250.000       ->  frame   7300 time 72350.000       ->  frame   7310 time 72450.000       ->  frame   7320 time 72550.000       ->  frame   7330 time 72650.000       ->  frame   7340 time 72750.000       ->  frame   7350 time 72850.000       ->  frame   7360 time 72950.000       ->  frame   7370 time 73050.000       ->  frame   7380 time 73150.000       ->  frame   7390 time 73250.000       ->  frame   7400 time 73350.000       ->  frame   7410 time 73450.000       ->  frame   7420 time 73550.000       ->  frame   7430 time 73650.000       ->  frame   7440 time 73750.000       ->  frame   7450 time 73850.000       ->  frame   7460 time 73950.000       ->  frame   7470 time 74050.000       ->  frame   7480 time 74150.000       ->  frame   7490 time 74250.000       ->  frame   7500 time 74350.000       ->  frame   7510 time 74450.000       ->  frame   7520 time 74550.000       ->  frame   7530 time 74650.000       ->  frame   7540 time 74750.000       ->  frame   7550 time 74850.000       ->  frame   7560 time 74950.000       ->  frame   7570 time 75050.000       ->  frame   7580 time 75150.000       ->  frame   7590 time 75250.000       ->  frame   7600 time 75350.000       ->  frame   7610 time 75450.000       ->  frame   7620 time 75550.000       ->  frame   7630 time 75650.000       ->  frame   7640 time 75750.000       ->  frame   7650 time 75850.000       ->  frame   7660 time 75950.000       ->  frame   7670 time 76050.000       ->  frame   7680 time 76150.000       ->  frame   7690 time 76250.000       ->  frame   7700 time 76350.000       ->  frame   7710 time 76450.000       ->  frame   7720 time 76550.000       ->  frame   7730 time 76650.000       ->  frame   7740 time 76750.000       ->  frame   7750 time 76850.000       ->  frame   7760 time 76950.000       ->  frame   7770 time 77050.000       ->  frame   7780 time 77150.000       ->  frame   7790 time 77250.000       ->  frame   7800 time 77350.000       ->  frame   7810 time 77450.000       ->  frame   7820 time 77550.000       ->  frame   7830 time 77650.000       ->  frame   7840 time 77750.000       ->  frame   7850 time 77850.000       ->  frame   7860 time 77950.000       ->  frame   7870 time 78050.000       ->  frame   7880 time 78150.000       ->  frame   7890 time 78250.000       ->  frame   7900 time 78350.000       ->  frame   7910 time 78450.000       ->  frame   7920 time 78550.000       ->  frame   7930 time 78650.000       ->  frame   7940 time 78750.000       ->  frame   7950 time 78850.000       ->  frame   7960 time 78950.000       ->  frame   7970 time 79050.000       ->  frame   7980 time 79150.000       ->  frame   7990 time 79250.000      Reading frame    8000 time 79350.000    ->  frame   8000 time 79350.000       ->  frame   8010 time 79450.000       ->  frame   8020 time 79550.000       ->  frame   8030 time 79650.000       ->  frame   8040 time 79750.000       ->  frame   8050 time 79850.000       ->  frame   8060 time 79950.000       ->  frame   8070 time 80050.000       ->  frame   8080 time 80150.000       ->  frame   8090 time 80250.000       ->  frame   8100 time 80350.000       ->  frame   8110 time 80450.000       ->  frame   8120 time 80550.000       ->  frame   8130 time 80650.000       ->  frame   8140 time 80750.000       ->  frame   8150 time 80850.000       ->  frame   8160 time 80950.000       ->  frame   8170 time 81050.000       ->  frame   8180 time 81150.000       ->  frame   8190 time 81250.000       ->  frame   8200 time 81350.000       ->  frame   8210 time 81450.000       ->  frame   8220 time 81550.000       ->  frame   8230 time 81650.000       ->  frame   8240 time 81750.000       ->  frame   8250 time 81850.000       ->  frame   8260 time 81950.000       ->  frame   8270 time 82050.000       ->  frame   8280 time 82150.000       ->  frame   8290 time 82250.000       ->  frame   8300 time 82350.000       ->  frame   8310 time 82450.000       ->  frame   8320 time 82550.000       ->  frame   8330 time 82650.000       ->  frame   8340 time 82750.000       ->  frame   8350 time 82850.000       ->  frame   8360 time 82950.000       ->  frame   8370 time 83050.000       ->  frame   8380 time 83150.000       ->  frame   8390 time 83250.000       ->  frame   8400 time 83350.000       ->  frame   8410 time 83450.000       ->  frame   8420 time 83550.000       ->  frame   8430 time 83650.000       ->  frame   8440 time 83750.000       ->  frame   8450 time 83850.000       ->  frame   8460 time 83950.000       ->  frame   8470 time 84050.000       ->  frame   8480 time 84150.000       ->  frame   8490 time 84250.000       ->  frame   8500 time 84350.000       ->  frame   8510 time 84450.000       ->  frame   8520 time 84550.000       ->  frame   8530 time 84650.000       ->  frame   8540 time 84750.000       ->  frame   8550 time 84850.000       ->  frame   8560 time 84950.000       ->  frame   8570 time 85050.000       ->  frame   8580 time 85150.000       ->  frame   8590 time 85250.000       ->  frame   8600 time 85350.000       ->  frame   8610 time 85450.000       ->  frame   8620 time 85550.000       ->  frame   8630 time 85650.000       ->  frame   8640 time 85750.000       ->  frame   8650 time 85850.000       ->  frame   8660 time 85950.000       ->  frame   8670 time 86050.000       ->  frame   8680 time 86150.000       ->  frame   8690 time 86250.000       ->  frame   8700 time 86350.000       ->  frame   8710 time 86450.000       ->  frame   8720 time 86550.000       ->  frame   8730 time 86650.000       ->  frame   8740 time 86750.000       ->  frame   8750 time 86850.000       ->  frame   8760 time 86950.000       ->  frame   8770 time 87050.000       ->  frame   8780 time 87150.000       ->  frame   8790 time 87250.000       ->  frame   8800 time 87350.000       ->  frame   8810 time 87450.000       ->  frame   8820 time 87550.000       ->  frame   8830 time 87650.000       ->  frame   8840 time 87750.000       ->  frame   8850 time 87850.000       ->  frame   8860 time 87950.000       ->  frame   8870 time 88050.000       ->  frame   8880 time 88150.000       ->  frame   8890 time 88250.000       ->  frame   8900 time 88350.000       ->  frame   8910 time 88450.000       ->  frame   8920 time 88550.000       ->  frame   8930 time 88650.000       ->  frame   8940 time 88750.000       ->  frame   8950 time 88850.000       ->  frame   8960 time 88950.000       ->  frame   8970 time 89050.000       ->  frame   8980 time 89150.000       ->  frame   8990 time 89250.000      Reading frame    9000 time 89350.000    ->  frame   9000 time 89350.000       ->  frame   9010 time 89450.000       ->  frame   9020 time 89550.000       ->  frame   9030 time 89650.000       ->  frame   9040 time 89750.000       ->  frame   9050 time 89850.000       ->  frame   9060 time 89950.000       ->  frame   9070 time 90050.000       ->  frame   9080 time 90150.000       ->  frame   9090 time 90250.000       ->  frame   9100 time 90350.000       ->  frame   9110 time 90450.000       ->  frame   9120 time 90550.000       ->  frame   9130 time 90650.000       ->  frame   9140 time 90750.000       ->  frame   9150 time 90850.000       ->  frame   9160 time 90950.000       ->  frame   9170 time 91050.000       ->  frame   9180 time 91150.000       ->  frame   9190 time 91250.000       ->  frame   9200 time 91350.000       ->  frame   9210 time 91450.000       ->  frame   9220 time 91550.000       ->  frame   9230 time 91650.000       ->  frame   9240 time 91750.000       ->  frame   9250 time 91850.000       ->  frame   9260 time 91950.000       ->  frame   9270 time 92050.000       ->  frame   9280 time 92150.000       ->  frame   9290 time 92250.000       ->  frame   9300 time 92350.000       ->  frame   9310 time 92450.000       ->  frame   9320 time 92550.000       ->  frame   9330 time 92650.000       ->  frame   9340 time 92750.000       ->  frame   9350 time 92850.000       ->  frame   9360 time 92950.000       ->  frame   9370 time 93050.000       ->  frame   9380 time 93150.000       ->  frame   9390 time 93250.000       ->  frame   9400 time 93350.000       ->  frame   9410 time 93450.000       ->  frame   9420 time 93550.000       ->  frame   9430 time 93650.000       ->  frame   9440 time 93750.000       ->  frame   9450 time 93850.000       ->  frame   9460 time 93950.000       ->  frame   9470 time 94050.000       ->  frame   9480 time 94150.000       ->  frame   9490 time 94250.000       ->  frame   9500 time 94350.000       ->  frame   9510 time 94450.000       ->  frame   9520 time 94550.000       ->  frame   9530 time 94650.000       ->  frame   9540 time 94750.000       ->  frame   9550 time 94850.000       ->  frame   9560 time 94950.000       ->  frame   9570 time 95050.000       ->  frame   9580 time 95150.000       ->  frame   9590 time 95250.000       ->  frame   9600 time 95350.000       ->  frame   9610 time 95450.000       ->  frame   9620 time 95550.000       ->  frame   9630 time 95650.000       ->  frame   9640 time 95750.000       ->  frame   9650 time 95850.000       ->  frame   9660 time 95950.000       ->  frame   9670 time 96050.000       ->  frame   9680 time 96150.000       ->  frame   9690 time 96250.000       ->  frame   9700 time 96350.000       ->  frame   9710 time 96450.000       ->  frame   9720 time 96550.000       ->  frame   9730 time 96650.000       ->  frame   9740 time 96750.000       ->  frame   9750 time 96850.000       ->  frame   9760 time 96950.000       ->  frame   9770 time 97050.000       ->  frame   9780 time 97150.000       ->  frame   9790 time 97250.000       ->  frame   9800 time 97350.000       ->  frame   9810 time 97450.000       ->  frame   9820 time 97550.000       ->  frame   9830 time 97650.000       ->  frame   9840 time 97750.000       ->  frame   9850 time 97850.000       ->  frame   9860 time 97950.000       ->  frame   9870 time 98050.000       ->  frame   9880 time 98150.000       ->  frame   9890 time 98250.000       ->  frame   9900 time 98350.000       ->  frame   9910 time 98450.000       ->  frame   9920 time 98550.000       ->  frame   9930 time 98650.000       ->  frame   9940 time 98750.000       ->  frame   9950 time 98850.000       ->  frame   9960 time 98950.000       ->  frame   9970 time 99050.000       ->  frame   9980 time 99150.000       ->  frame   9990 time 99250.000      Reading frame   10000 time 99350.000    ->  frame  10000 time 99350.000       ->  frame  10010 time 99450.000       ->  frame  10020 time 99550.000       ->  frame  10030 time 99650.000       ->  frame  10040 time 99750.000       ->  frame  10050 time 99850.000       ->  frame  10060 time 99950.000       ->  frame  10070 time 100050.000      
[DEBUG  ] 
[DEBUG  ] 
[DEBUG  ] GROMACS reminds you: "Carbohydrates is all they groove" (Frank Zappa)
[DEBUG  ] 
[DEBUG  ] Note that major changes are planned in future for trjconv, to improve usability and utility.
[DEBUG  ] Select group for output
[DEBUG  ] Selected 20: 'GMXMMPBSA_REC_GMXMMPBSA_LIG'
[INFO   ] Building AMBER topologies from GROMACS files... Done.

[INFO   ] Loading and checking parameter files for compatibility...
[INFO   ] Preparing trajectories for simulation...

[INFO   ] 7 frames were processed by cpptraj for use in calculation.
[INFO   ] Running calculations on normal system...
[INFO   ] Beginning GB calculations with /home/romi/anaconda3/envs/gmxMMPBSA/bin/sander
[INFO   ]   calculating complex contribution...
[INFO   ]   calculating receptor contribution...
[INFO   ]   calculating ligand contribution...
[INFO   ] Beginning PB calculations with /home/romi/anaconda3/envs/gmxMMPBSA/bin/sander
[INFO   ]   calculating complex contribution...
[INFO   ]   calculating receptor contribution...
[INFO   ]   calculating ligand contribution...
[INFO   ] Parsing results to output files...

[DEBUG  ] Creating converter from 5 to 3
[INFO   ] Timing:
[INFO   ] Total GROMACS setup time:                   0.305 min.
[INFO   ] Total AMBER setup time:                     0.012 min.
[INFO   ] Creating trajectories with cpptraj:         0.005 min.
[INFO   ] Total calculation time:                    16.739 min.
[INFO   ] Total GB calculation time:                  2.218 min.
[INFO   ] Total PB calculation time:                 14.520 min.
[INFO   ] Statistics calculation & output writing:    0.004 min.
[INFO   ] Total time taken:                          17.067 min.

[INFO   ] 
   Finalizing gmx_MMPBSA: [ERROR  ] = 0; [WARNING] = 0
   Check the gmx_MMPBSA.log file for more details...

[INFO   ] 
 Thank you for using gmx_MMPBSA. Please consider supporting gmx_MMPBSA by citing our publication:
    Valdés-Tresanco, M.S., Valdés-Tresanco, M.E., Valiente, P.A. and Moreno E. 
    gmx_MMPBSA: A New Tool to Perform End-State Free Energy Calculations with GROMACS. 
    J Chem Theory Comput., 2021, 17 (10):6281-6291. Epub 2021 Sep 29. PMID: 34586825.
    https://pubs.acs.org/doi/10.1021/acs.jctc.1c00645

Also consider citing MMPBSA.py:
    Miller III, B. R., McGee Jr., T. D., Swails, J. M. Homeyer, N. Gohlke, H. and Roitberg, A. E.
    MMPBSA.py: An Efficient Program for End-State Free Energy Calculations.
    J. Chem. Theory Comput., 2012, 8 (9) pp 3314-3321

[INFO   ] Opening gmx_MMPBSA_ana to analyze results...

[INFO   ] Finalized...
